FastQCFastQC Report
Sat 11 May 2024
EGAF00008272969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201443464
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG6105019430.30636625668828No Hit
TCCAATGC4944547224.54558267524629No Hit
GTAGCACA4728036023.470783842358866No Hit
CGTTTGAT4222022020.958843320923034No Hit
AAGCGCTA2825730.14027409695456786No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)