FastQCFastQC Report
Sat 11 May 2024
EGAF00008272972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199876177
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG6070224330.36992397548208No Hit
TCCAATGC4892354424.47692603206034No Hit
GTAGCACA4690033123.464692843309688No Hit
CGTTTGAT4187751020.951726528169488No Hit
AAGCGCTA2787000.13943632712166593No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)