FastQCFastQC Report
Wed 8 May 2024
EGAF00008272978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21398340
Total Bases171.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG611248028.565206459940352No Hit
GAAGGAAC606280328.333052937751248No Hit
TTTCATGA571972826.729774365675098No Hit
ACGTCCCT319600714.935770718663225No Hit
TTACATGA574330.26839932443357756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)