FastQCFastQC Report
Wed 8 May 2024
EGAF00008272981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21868100
Total Bases174.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG624114128.539932595881673No Hit
GAAGGAAC621678228.428542031543664No Hit
TTTCATGA584730626.738975951271488No Hit
ACGTCCCT326937614.950434651387182No Hit
TTACATGA581900.2660953626515335No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)