FastQCFastQC Report
Sat 11 May 2024
EGAF00008272984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194363409
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC5779514129.735607796424272No Hit
GCGGATAG4978553125.61466237711441No Hit
TTATCGTT4654851723.94921823994145No Hit
CATCTCCA3809484919.599804920071143No Hit
CATCTCAA5827250.299812090659513No Hit
TTATCGTA2893170.14885363530539847No Hit
GCGGCTAG2062740.10612800066703915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)