FastQCFastQC Report
Sat 11 May 2024
EGAF00008272987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194011575
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC5769639529.738635439663845No Hit
GCGGATAG4966920725.601156528933906No Hit
TTATCGTT4636941423.90033378163133No Hit
CATCTCCA3810267019.63937976381048No Hit
CATCTCAA5842890.30116192809630044No Hit
TTATCGTA2890170.14896894682701278No Hit
GCGGCTAG2287080.11788368812530901No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)