FastQCFastQC Report
Sat 11 May 2024
EGAF00008272990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192454940
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC5721549229.729292477501485No Hit
GCGGATAG4914276225.5346846383886No Hit
TTATCGTT4615033423.97981262523061No Hit
CATCTCCA3773319119.606247051907317No Hit
CATCTCAA5775810.30011232759211065No Hit
TTATCGTA2832730.14718925895069254No Hit
GCGGCTAG2643470.13735526871900508No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)