FastQCFastQC Report
Sat 11 May 2024
EGAF00008272993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192347148
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC5716710429.720796276116346No Hit
GCGGATAG4910305225.528349398765194No Hit
TTATCGTT4620149624.019849777029187No Hit
CATCTCCA3763784119.56766263048517No Hit
CATCTCAA5753120.2991008735934052No Hit
TTATCGTA2855010.14843006666259487No Hit
GCGGCTAG2440740.12689244552770806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)