FastQCFastQC Report
Sat 11 May 2024
EGAF00008273008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228881649
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGAGAGT6841985229.893113886120243No Hit
CTATAGTG5535478024.18489216669354Clontech Universal Primer Mix Short (100% over 8bp)
AGTCCCAC5533688024.17707153097276No Hit
TACGTTCA4830066921.10290152619444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)