FastQCFastQC Report
Thu 9 May 2024
EGAF00008273014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26950663
Total Bases215.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT911806533.83243299060955No Hit
ACAAGGTA637215623.643781973007492No Hit
GTGGTACC628583523.323489295977616No Hit
TACTATAG483071717.924297446782663No Hit
GGGGTACC335990.1246685471151489No Hit
CGTCCCGA296860.11014942378226465No Hit
GTGGTACA283880.10533321573573161No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)