FastQCFastQC Report
Thu 9 May 2024
EGAF00008273017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27591778
Total Bases220.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT933860333.84560067133042No Hit
ACAAGGTA654122123.70713840913043No Hit
GTGGTACC644129223.34496892516314No Hit
TACTATAG494856317.93491887329624No Hit
CGTCCCGA302760.1097283400873985No Hit
GGGGTACC292150.10588299166512576No Hit
GTGGTACA290490.10528136316550532No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)