FastQCFastQC Report
Sat 11 May 2024
EGAF00008273023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195704017
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT5362966727.40345743644087No Hit
CAGATGGG5138938826.258729272787484No Hit
AGTGGAAC4618135523.597550887266664No Hit
TCACATCA4280196021.870762111132343Illumina PCR Primer Index 1 (100% over 8bp)
GTCTCCTA4464330.2281164213404981No Hit
CAGATGGA2985480.15255077773901798No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)