FastQCFastQC Report
Sat 11 May 2024
EGAF00008273026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194327562
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT5334054227.44877847024088No Hit
CAGATGGG5103427826.26198644945692No Hit
AGTGGAAC4579307523.56488936963044No Hit
TCACATCA4244528521.842133232752644Illumina PCR Primer Index 1 (100% over 8bp)
GTCTCCTA4377990.22528919495218078No Hit
CAGATGGA2956830.15215700591149287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)