FastQCFastQC Report
Wed 8 May 2024
EGAF00008273032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29843425
Total Bases238.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGATGC972372432.58246665722852No Hit
TGATTCTA725983424.32641025619546No Hit
ACTAGGAG706885323.68646695210084No Hit
CAGCCACT511815517.15002550813119No Hit
ACTCGGAG1630630.5463950602184569No Hit
CAGCCACA1169170.3917680360079314No Hit
ACGAGGAG853680.28605295806362707No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)