FastQCFastQC Report
Wed 8 May 2024
EGAF00008273035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30608342
Total Bases244.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGATGC1000278732.67993738439018No Hit
TGATTCTA743435724.288662874977025No Hit
ACTAGGAG730731023.873589755367995No Hit
CAGCCACT524790517.145342273031318No Hit
ACTCGGAG1370940.44789750454304256No Hit
CAGCCACA1196470.390896703911633No Hit
ACGAGGAG713860.23322400148299438No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)