FastQCFastQC Report
Wed 8 May 2024
EGAF00008273036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30608342
Total Bases795.8 Mbp
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA564110.18429943052779532No Hit
CGTTCGTTATCGGAATTAACCAGACA468970.15321640094063246No Hit
TGACTTTTACTTCCTCTAGATAGTCA430100.14051724853309597No Hit
CCACCTACTAAGAACGGCCATGCACC355790.11623955325642925No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA317850.10384423958671136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)