FastQCFastQC Report
Sat 11 May 2024
EGAF00008273038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206457361
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCGC7215796634.950541676254396No Hit
TCTCGTTT5187531625.126406609449976No Hit
GGCTAGCG4922568923.8430292635582No Hit
CAAGTAAA3126497115.143548696236605No Hit
TCTCGTTA5104180.24722683537546525No Hit
GGCTAGCA3969870.1922852244536827No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)