FastQCFastQC Report
Sat 11 May 2024
EGAF00008273041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205762056
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCGC7182877534.90865925251058No Hit
TCTCGTTT5165080425.10220057287919No Hit
GGCTAGCG4920392423.913021164601894No Hit
CAAGTAAA3113322515.130692998129842No Hit
TCTCGTTA5095010.24761659652156662No Hit
GGCTAGCA3959930.19245190668195888No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)