FastQCFastQC Report
Sat 11 May 2024
EGAF00008273044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204363440
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCGC7128687734.8824021556889No Hit
TCTCGTTT5137278425.13795226778332No Hit
GGCTAGCG4880635823.88213762696498No Hit
CAAGTAAA3094185015.140599512319817No Hit
TCTCGTTA5046000.24691304863531366No Hit
GGCTAGCA3892520.1904704677118373No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)