FastQCFastQC Report
Fri 10 May 2024
EGAF00008273056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164173993
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC4647042128.305592226169463No Hit
AAGATCAT4161223425.34642256036253No Hit
CCTGAAGG4047362424.65288396804724No Hit
TGATCTCA3454778621.043397537391932No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)