FastQCFastQC Report
Fri 10 May 2024
EGAF00008273062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162050627
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC4586492928.302839581114362No Hit
AAGATCAT4098908725.294000868012684No Hit
CCTGAAGG3989674824.619928190712894No Hit
TGATCTCA3421959021.116604504097353No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)