FastQCFastQC Report
Wed 8 May 2024
EGAF00008273068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10155170
Total Bases81.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG298960229.439211751255762No Hit
CTCCTCTA274028126.98409775513359No Hit
TGGTAAAC248688824.488885956611263No Hit
GAAAGGGT178768317.603673793742498No Hit
CTCCTATA217230.2139107469397361No Hit
GTCCTCTA168490.16591548935172923No Hit
CTCCTGTA158590.15616676037919602No Hit
CTCCTCAA105850.10423262239824642No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)