FastQCFastQC Report
Wed 8 May 2024
EGAF00008273071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10363342
Total Bases82.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG305883729.51593221568872No Hit
CTCCTCTA279417726.962122836436354No Hit
TGGTAAAC253446824.456087621155415No Hit
GAAAGGGT183332017.69043229491027No Hit
CTCCTATA219720.21201654832967973No Hit
CTCCTGTA164400.1586360847687937No Hit
GTCCTCTA137030.13222568549797933No Hit
CTCCTCAA105470.10177218893287514No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)