FastQCFastQC Report
Sat 11 May 2024
EGAF00008273074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199867975
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC6167026730.855501988249994No Hit
CCCAGGAT4975793724.895402577626555No Hit
GTTCCTCA4620321323.116866521512513ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG4095820420.49262969717885No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)