FastQCFastQC Report
Sat 11 May 2024
EGAF00008273080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197196320
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC6095022530.90839879770576No Hit
CCCAGGAT4892579024.810701335603017No Hit
GTTCCTCA4564515723.14706329205332ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG4038029520.477205152712788No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)