FastQCFastQC Report
Wed 8 May 2024
EGAF00008273086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11494217
Total Bases91.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC337708629.38073989728922No Hit
ACCCTCCT319325027.78136170562988No Hit
CAATGGAG239929420.873922947513517No Hit
TGGAATTA223340419.430675443138057No Hit
CAAGGGAG471190.4099365794120643No Hit
CACTGGAG366220.3186123943892829No Hit
GGGAATTA288220.2507521825975619No Hit
CCATGGAG194650.16934602852895503No Hit
TCCCTCCT191400.1665185197043No Hit
ACCCTCCA147650.12845590091086673No Hit
TGGAATGA137110.11928607229183162No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)