FastQCFastQC Report
Fri 10 May 2024
EGAF00008273087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11494217
Total Bases298.8 Mbp
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACTTTTACTTCCTCTAGATAGTCA193990.16877182673687124No Hit
CGTTCGTTATCGGAATTAACCAGACA190940.1661183184552719No Hit
GTCTCGTTCGTTATCGGAATTAACCA122880.10690593365341894No Hit
CCACCTACTAAGAACGGCCATGCACC115910.10084201472792796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)