FastQCFastQC Report
Wed 8 May 2024
EGAF00008273089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008273089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11764905
Total Bases94.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC345423229.360475073959375No Hit
ACCCTCCT328342727.908657145977806No Hit
CAATGGAG247709421.054942645095732No Hit
TGGAATTA228979019.462885590661376No Hit
CAAGGGAG394190.33505582918009114No Hit
CACTGGAG292460.2485867926685341No Hit
GGGAATTA246960.20991244723183058No Hit
CCATGGAG180710.15360090030476234No Hit
ACCCTCCA152290.12944430915506755No Hit
TCCCTCCT148320.1260698662675134No Hit
TGGAATGA139850.11887048811698862No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)