FastQCFastQC Report
Wed 8 May 2024
EGAF00008287795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008287795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7850186
Total Bases62.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATTA752565495.86593234860932No Hit
GGGTATTA1635862.0838487139030843No Hit
GTGTATAA877011.117183720232871No Hit
GTGGATTA275030.3503483866496921No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)