FastQCFastQC Report
Wed 8 May 2024
EGAF00008325249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008325249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9614233
Total Bases721 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT108180.11252067637636824No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG102140.10623832395158304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)