FastQCFastQC Report
Wed 8 May 2024
EGAF00008325272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008325272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8850646
Total Bases663.7 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT103090.11647737351601227No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG95290.10766445748705801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)