FastQCFastQC Report
Fri 10 May 2024
EGAF00008325275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008325275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135437547
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT4165810830.758167821807938No Hit
GTCGATGC3242113323.938068665700214No Hit
TGATTCTA3238043723.908020868097974No Hit
ACTAGGAG2897786921.395742644393877No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)