FastQCFastQC Report
Wed 8 May 2024
EGAF00008325276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008325276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8672958
Total Bases650.4 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT95590.11021614540275648No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG91460.10545421758066856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)