FastQCFastQC Report
Tue 7 May 2024
EGAF00008325313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008325313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7155
Total Bases536.6 kbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG450.628930817610063No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG140.1956673654786862No Hit
CGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGG110.15373864430468204No Hit
AATACTTTTTCTCTTAGTCACCACTTTGGAGCATTTTTTTGCCCAGCACC110.15373864430468204No Hit
GGAGGACCGGTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCT110.15373864430468204No Hit
AGTCATAAACAGCAGACCCCAAGCCCTGAGAGCTCATTAATAAACCTAGT100.1397624039133473No Hit
GATTTTTATGGAATTGTGTGGCACTATTGTAGTCTGAATTTTATTGGCTT100.1397624039133473No Hit
TACCATTTAATATGCCCCGTAAATGTCTTCAGTGTTCTTCAGGGTAGTTG90.12578616352201258No Hit
GGAAAGGCATGAAGAAGTTGAGGGACTGGCTGAAGATCACGTACTTACTA90.12578616352201258No Hit
CCTTTTTTTACAGATGAGATTGTAAAGTGAGCCTGTAAGTGATTTACGGC90.12578616352201258No Hit
GTTTTGTTTTCCTTAATCCCAAATGTGATAGTACTTCTTGGGTTTTTATG90.12578616352201258No Hit
AAACAGTTTGGCCCTAATCTGACTTCCCATTTTGCACTATTTTACCATAC90.12578616352201258No Hit
GTAGACTCCAATAGATAGAACATGTTATGTACACACCGTCCCTCCATATA90.12578616352201258No Hit
CTATCTTTTCTTACCCTTACTTTTGGGACTCAAGGCTAAGGGCTATTGTT90.12578616352201258No Hit
GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCAACTAGCCGTTG90.12578616352201258No Hit
ATTCATTAGTAACACTTTATTCAAGAAAATTCAGGCTTTGCAGAAGGAGA90.12578616352201258No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA90.12578616352201258No Hit
AGTATAACCGCTTCCTGTCAGCCATGCTGACACACAGGCCCCTAGCGGTT80.11180992313067784No Hit
GAAGATTCTCTTGAAGAAATCTGCATAATTGCAGACACAAACAATGGCCT80.11180992313067784No Hit
CTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC80.11180992313067784No Hit
ATTATTAATAATATTTTAGTATACAGAGCTATTCTACAGTTTTTACATTG80.11180992313067784No Hit
GTAATCAGGAGCATTTGTTGTATTTTTGTTTGATAATCAGAATAATTTAA80.11180992313067784No Hit
GGGTGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTG80.11180992313067784No Hit
GATCATGATAGACTTGTTAGGGCTTCAAGGCCCTCAGAGATGATCAGTCC80.11180992313067784No Hit
ATTTGATGATATGAAAAAATTATATTTTTAGATGTGATCATAGTATTGTG80.11180992313067784No Hit
GTTTTCTCATATATGATGTAAACTTGCTTTTAAGGACAAGTGTGAATGTG80.11180992313067784No Hit
GTTCTAGTCATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGT80.11180992313067784No Hit
AGATAATAAAGTTCTATAGCAATTTAACCCTAGAATCTTTTTGAAAAGTA80.11180992313067784No Hit
CAGAAAATGGACATCCCTTTCCTTGGGGAAATGCCCGCAGAGCCCATGAC80.11180992313067784No Hit
AGGACGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATAC80.11180992313067784No Hit
TACAAAAATTAGTAGCATTTCTATACACCAATAACGTTCAAGCTAAGATC80.11180992313067784No Hit
AGAGGCAAAGCGCAGGAAGAGCACATGCAGCTACTATGAAGACGAGGACG80.11180992313067784No Hit
AGGACCTCATTTTCCTAACATGAAAATGGGTTGCATTTCAAAAATTCGTT80.11180992313067784No Hit
CTTCATCCCATTTGCAGAGCCTCAGACACGTCTTGGTGGTGAGGCTCAGT80.11180992313067784No Hit
GTTTTAATTAGTTACTGATATTTAACATTTTGGAGATTTTTACCCAAAAA80.11180992313067784No Hit
CGAGAAGTGGCCCTTGGAGTGGACAGAGATGGGCTCATTGCAGTCCCCAA80.11180992313067784No Hit
GTCTGCAGTTACACAAAATCACATTCAATAGCAACAAAAATACTAGATTA80.11180992313067784No Hit
GGGACACTCCTTTTCTGTTCCTCAGTTGTCGCCCTCACGAGAGGAAGGAG80.11180992313067784No Hit
GTCACTCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCCACCTCC80.11180992313067784No Hit
GGCAGCTGGCAGCACGCCTCACAATGTATCCACACAGAGGTATTTCTGTC80.11180992313067784No Hit
GGAATTTTAATTCTGAAAAGAAATCATCTCTCCTGTCAGAGGAACAACAA80.11180992313067784No Hit
GAAGCACCTTTCAGGAGAGGAGCATGAGAAACTGCAGCAACTGCTTCAGC80.11180992313067784No Hit
GAATGTGAAGGCTGTGTCTGAGACTCCTGCAGTGCCACCAGTTTCAGAAG80.11180992313067784No Hit
GGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA80.11180992313067784No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)