FastQCFastQC Report
Tue 7 May 2024
EGAF00008337380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008337380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17160
Total Bases2.5 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGCGGGGG5743.344988344988345No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGC1670.9731934731934733No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT800.4662004662004662No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT740.43123543123543123No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGA690.4020979020979021No Hit
GCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAC590.34382284382284384No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGA520.30303030303030304No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC520.30303030303030304No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG470.2738927738927739No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC450.26223776223776224No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGCGGG440.2564102564102564No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGCGGGGGGG420.24475524475524477No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG410.23892773892773894No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT400.2331002331002331No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG400.2331002331002331No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGCGTGGG390.22727272727272727No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT390.22727272727272727No Hit
GCAGCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC370.21561771561771562No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC360.2097902097902098No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGA360.2097902097902098No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC290.16899766899766902No Hit
CCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGA280.16317016317016317No Hit
ACGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC270.15734265734265734No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA270.15734265734265734No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA260.15151515151515152No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC250.1456876456876457No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGCGGGGT240.13986013986013987No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT240.13986013986013987No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTAGCGGGTG230.13403263403263405No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG230.13403263403263405No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA230.13403263403263405No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC230.13403263403263405No Hit
ACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGA230.13403263403263405No Hit
GTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA220.1282051282051282No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCA220.1282051282051282No Hit
TTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTGAGTA220.1282051282051282No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG210.12237762237762238No Hit
TTTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCTG200.11655011655011654No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAA200.11655011655011654No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC200.11655011655011654No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA190.11072261072261073No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG190.11072261072261073No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC190.11072261072261073No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC190.11072261072261073No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAA180.1048951048951049No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA180.1048951048951049No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAATAT180.1048951048951049No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)