FastQCFastQC Report
Wed 8 May 2024
EGAF00008337461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008337461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362125
Total Bases54.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATCACTTGGCCCTTTCTCTTCTTATCTCCTCCCAGTTCAAAATGCTTG7990.2206420434932689No Hit
ACACCTTGACCTAACGTCTTTACGTGGGTACTTGCGCTTACTTTGTAGCC6100.16845012081463584No Hit
GGGTCTCCGCTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTAGC5370.1482913358646876No Hit
GAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTAGAGG4420.12205730065585087No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA4290.11846738004832585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)