FastQCFastQC Report
Tue 7 May 2024
EGAF00008337648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008337648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1868
Total Bases282 kbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.32119914346895073No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG30.16059957173447537No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATAGAC30.16059957173447537No Hit
AACGACGATGGCGTGACGGCGTTCCCGACGTATGAAAAGCTTCGGCCCTG30.16059957173447537No Hit
GAGTATCATGTGTCCTCCAAATGACTGCATCAGTCCCTGTCTCTTATACA20.10706638115631692No Hit
GACTGCCGGTAAATGCCCAGCATATGCCCGGCGCTGTCTCTTATACACAT20.10706638115631692No Hit
ATTTTAATCACCTACAACTTTTAAACTAAACTTTAAGCTGTTTAAGTCAC20.10706638115631692No Hit
GCCTTATTTAAACCTGGGCCGAGGATTCGTGGAATCTGCTTGATCAGAGA20.10706638115631692No Hit
GGCTCAAAAAATATATAGCAGTGCATGCTAGCATCACCATAAAAATTACT20.10706638115631692No Hit
CGGCTGAAGTGGCTGGGCATGACGCCGTTTCTCTGACGTCCCCCATAGAT20.10706638115631692No Hit
AAAGCGGACTTTCTTTCAGCAGGATGTGGGATCTGTCTCTTATACACATC20.10706638115631692No Hit
ACCCTGCATGTTGGTTTATTCAGTCTGCCATAACAAAATGCCACAGACTG20.10706638115631692No Hit
GATTAAATCCGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATG20.10706638115631692No Hit
GGTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGC20.10706638115631692No Hit
ATCGTGGCGATCGCGCCGATGACGCCACCACGTGTCCCTGTCTCTTATAC20.10706638115631692No Hit
CTAGTCACTGGCCTCTTAGCTCCTGAGACGTGCCAAGTTCTTTTCCAAGG20.10706638115631692No Hit
GCTCTCCCATGAGGGCGCGGATTTTGCGGTCAGCATGCATGACGGTGGTG20.10706638115631692No Hit
AATACAAGAAGCACTGGGGGCAGATGCAAGACCAGACAAAGCCTCCCTCA20.10706638115631692No Hit
CTAGATCCGGTGTAGCTTGGCTTTTCCCCCACCACCCTGCCAAAGAGAAA20.10706638115631692No Hit
GGTAATACCAGCCCACCTGCGCGTAGTTGTTGCTGTCTCTTATACACATC20.10706638115631692No Hit
GTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCA20.10706638115631692No Hit
GTGTTGCAATATGCAGAGGATGTACTGTCTGGAAAGGTGTCAGCTGACAA20.10706638115631692No Hit
GCTTTAAATGACGCAATTCTCCCTGCGTCATGGATTTCAAGGTCTTTTAA20.10706638115631692No Hit
CACCATATCAGGATGCACCCACTTTTGAGCCTGTCTCTTATACACATCTG20.10706638115631692No Hit
CTCCTAGAATCTTACTAATGCCTGTTTCTTCTATACCCCCTGTCTCTTAT20.10706638115631692No Hit
GTTTTCTGAGAAAAGCCAAGACAAAAATATAAAGTCACACATGTTAATTA20.10706638115631692No Hit
GCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATA20.10706638115631692No Hit
AACATCTCTGTACATGAGTGAAGAAACAGTACTGTCTCTTATACACATCT20.10706638115631692No Hit
ACCCTACATTTTGTGCATAAAGTGTAAGTGTATAAGCATATCAATATTAA20.10706638115631692No Hit
CAGAAGGAGAAGTAATTAAATACAATTTCTTCCTCCTCTACACTGTCTCT20.10706638115631692No Hit
CTTCTGCTTTCTCCTGCAAATTAAGTTATTGTAGTTTTGGTTTTTTTGTT20.10706638115631692No Hit
ACCAAGAGCACGGTGTTTGCTCTGTTAGCAAATACTTAAAAGATTTTAAA20.10706638115631692No Hit
GATGTATATGGAAGGTAAATTTTTAAAGGATTTGCATATCTGATATATCT20.10706638115631692No Hit
GTTGTAGATCCTGTATGGGTAATATCTTTACCAACCTCAGTTTTATTAGA20.10706638115631692No Hit
ACAGTAATATATAAGTTAGAAGGGTAATAAATGGAGCTAAACTATTCTAA20.10706638115631692No Hit
CCTTTAAGCACTGTAGGATAAATTCCTTGACATACTGTGACAAGGCTGTC20.10706638115631692No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)