FastQCFastQC Report
Tue 7 May 2024
EGAF00008339376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008339376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1109
Total Bases167.4 kbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.18034265103697023No Hit
ATCTATCTCAGTTCCTCCGCAATCGCCGATAATTTTCTAAGCCTGTGGTT20.18034265103697023No Hit
CCGCTGAACTGCCAAGGCTGACGCCAGGTGCTGTCTCTTATACACATCTG20.18034265103697023No Hit
ACTGATTTCACCTTATTATGCCTACTTTTTAATAAAGGAATTACAGTTAA20.18034265103697023No Hit
GGTTAAGAGCCCCACAAATGTCCTCACTCGCTTACCTCATGAAAATATTT20.18034265103697023No Hit
ACATTGCTCAGAGTTTCATCCGTTTGGTTAAGAAAACATTCCTTCAATTC20.18034265103697023No Hit
GCTTTTGTGTTATTAGGGCGCAAACAAGAATTTGTAAAATAAATAAATAA20.18034265103697023No Hit
TTGCATAATGGGTCAGCAAGTTAATTATAAATGCAAGATGATAAATCTTA20.18034265103697023No Hit
CGGCAGTGGCGGGTCGTCAAACAGCGTCGCCGTTAAAGCCGTTACTCAGT20.18034265103697023No Hit
GGACACGGTCATTCCAGCGACGGATGCGGGTGGCTCTGACAGGGTCATTC20.18034265103697023No Hit
GTCAAAGCCATCCCCAATCCATGCCCCACAGGAAGCCTGCTGTCTCTTAT20.18034265103697023No Hit
GTTATAATGGACCGAACAGCAAAATGTTGCAGTATTTTCTGATGAGCTGT20.18034265103697023No Hit
TTTAAAAACTATGCTGTTTACCTTCTTATTAAGTTGTAAGAATTTTTCTT20.18034265103697023No Hit
TCACACGAGTTAGAATGGCAATCATTAAAAAGTCAGGATACAACAGGTAC20.18034265103697023No Hit
ATAGAGACACTTATTAGTTTTAAGGTTAATTCCTGTCTCTTATACACATC20.18034265103697023No Hit
GTTTCCACGTAGCCCACAATGCCCACAACCACCATGGGTGGTGTCTCTAC20.18034265103697023No Hit
GGACTACAAGCACCCGCCACCACGCCCGGCTAATTTCTGTCTCTTATACA20.18034265103697023No Hit
CATCAAGCCCGACGTCCCCGCCGTACCGGCCGTCCGCAACGACTACGACC20.18034265103697023No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)