FastQCFastQC Report
Tue 7 May 2024
EGAF00008340705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008340705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1244
Total Bases187.8 kbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.2411575562700965No Hit
CTTCCTCGACGTGACGATCGAGGCCGACGCGCCGCACAAGGACCCCGTGC30.2411575562700965No Hit
CTCAAGGCCATCTCGGGCCTGCTCCGCTCCGAGAACGGCTGTCTCTTATA20.1607717041800643No Hit
AGTCACAAGAACATTGAATCATTTCAAATTCATGGTGCTGTCTCTTATAC20.1607717041800643No Hit
TGTCAGCCTTGTCTACGTGACGCGTTCTTGAAGTGGACCCAGGGCTGTCT20.1607717041800643No Hit
GGTCAAGGTAGTAGTACCAATGGAATGTTCCCAGGTGACAGCCCCCTTAA20.1607717041800643No Hit
ACGTAGGCCCATACCAGTTTCTGGGTCTCCGAGGCATCGGGTGTGGTGAA20.1607717041800643No Hit
GACATATAGATCCCTCTGGAAAGTTGCACAGCCACAGACTTCTCAGCACA20.1607717041800643No Hit
CTTCCTGGCTGATTCCGACCACCCCCATCGCTGTCTCTTATACACATCTG20.1607717041800643No Hit
GAAATGTTCAGGAAGCTGTAAAGAGACCTGTCTGGCGACTGTCTCTTATA20.1607717041800643No Hit
GCTCGGCCTGAAGTTTCCCCTTTTTAAAACTTTTTCCAGTCGGGTGTGGT20.1607717041800643No Hit
GGCTTAGTCCTGCTGCCTGAAACAGGCCTCCCAGCAGCCTGGACACTGTC20.1607717041800643No Hit
ACCCCGATGAACTGGCCGCAGTTGAAGAAGCCGTCGTCGAGAGGTCATCT20.1607717041800643No Hit
GGTCAGTACTGCTCGGACTGACCGCCGTCGATCGGGATGGTGGTGGCGTC20.1607717041800643No Hit
ATTAATTAATTTAACAGCATCATTCATAAATTGAAAAATTCCAGCTCTCA20.1607717041800643No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)