FastQCFastQC Report
Tue 7 May 2024
EGAF00008341229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008341229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3027
Total Bases457 kbp
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.19821605550049554No Hit
GTCTTGGAACAATAAGCAAACAATGCTTAAATTTTTCATTCAAATTCACT50.16518004625041297No Hit
CCTCCCCTGATGGTGAACTTGTAGACGTGGCCTGTGAAGATTTAGAACTG40.13214403700033034No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.13214403700033034No Hit
CATTCAGACCACCTCAACAATGCATGATCAGTAACATTACAATGAACATT40.13214403700033034No Hit
TGTCAAAAGACCTCAAGGTAGAAAAAAATAAAATAAAAATATAAATATCT40.13214403700033034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)