FastQCFastQC Report
Tue 7 May 2024
EGAF00008342905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008342905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1367
Total Bases206.4 kbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCTTGCTGCGTATCCGCAATCAAGATGGGTGAGCAGATGCAGTTCTT30.21945866861741037No Hit
GAGATGGAATTTGAGACCATGGGTCCCTGTCTCTTATACACATCTGACGC20.1463057790782736No Hit
ATTATATTCATCATTCGATTCAAACCCTATTGTTTTGGCAATATCCGTCT20.1463057790782736No Hit
CGTTTATTTCAAGAAAATTGTCTTTTACAGATGTTTACTTACTGTCTCTT20.1463057790782736No Hit
CCGTCATTCAGCGTGACCTGGATCTGGGACTGCGAGCTCGCCGCCTGTCT20.1463057790782736No Hit
GCACCCCGGGTTGGTTGTCGGAGTAGGTGGTGAAGATCTGCGTCTGCTTG20.1463057790782736No Hit
TGCATCGCATGTTCGAGGGTATTTTCTTTTTAGAAAATTGTTACTTTGTT20.1463057790782736No Hit
ATCTGGGTCCGACTTCGGATGGTCGGTAAAATCTTTTCTTCATCGCTTGT20.1463057790782736No Hit
GTCTTGCTGCTATCAGCTTTTTCTCCCTTTGATGTGGCCTGGGATGATAA20.1463057790782736No Hit
TAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT20.1463057790782736No Hit
CCCTGAAACCCATCCCGGGTCTTGGCACCAAATATAAGAGCTGTCTCTTA20.1463057790782736No Hit
TTCCAGCAGTGGACTGGAACGACCTCATATTGACTTGTTAAGAGCCTGTC20.1463057790782736No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)