FastQCFastQC Report
Wed 29 May 2024
EGAF00008348478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008348478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478556124
Total Bases11.4 Gbp
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCGATATAACCTGGTGA17824260.3724591350125529No Hit
CAGACGCGTCACGATTGAACCGCT11063480.23118458724394048No Hit
CAGACGCGTAACCGGACGCCTAAA6890520.14398561954250533No Hit
CAGACGCGTATTGGCTGAGGAAGG6048900.12639896757438632No Hit
CAGACGCGGTTAAAGCTAGGCGTA6015660.1257043781974463No Hit
CAGACGCGGCGGTACACGCAATCA5977520.12490739748636044No Hit
CAGACGCGAGGTTGCGAATCGTTC5422030.11329977254663655No Hit
CAGACGCGTGGTGTGACAACTAGC5414410.11314054357394453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)