FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008402195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008402195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28048947
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCAGAGATCTCGTA281357610.030950538000589TruSeq Adapter, Index 1 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCAGAGATATCGTA1022630.364587661704377TruSeq Adapter, Index 1 (97% over 36bp)
GAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCAGAGATCTCGT834780.297615450590712TruSeq Adapter, Index 1 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCAGAGATCTCGTAT424400.15130692785009006TruSeq Adapter, Index 1 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)