FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122804320
Total Bases9.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG4719330.3842967413524215No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4033780.32847215798271595No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC3280330.2671184531619083No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT1501980.12230677226990061No Hit
CCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA1311470.10679347436637408No Hit
GCCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCA1236450.10068456875132732No Hit
CTCTGAGTGAAGTGTACTATCCCATCACTGAAGCCCACAGGAACAAGTCC1232660.10037594768653091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)