FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59934554
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA7110571.1863890736552407No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG834950.1393102883521916No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC812810.13561625902813926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)