FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125883113
Total Bases9.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC6194340.49207076726804494No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2354940.18707354337511498No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2241320.17804771002127984No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT2191920.17412343465004715No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC1929050.15324136447118208No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT1710390.1358712824332522No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1585070.1259160154388619No Hit
CTCTGAGTGAAGTGTACTATCCCATCACTGAAGCCCACAGGAACAAGTCC1417650.11261637611392722No Hit
CTTCATTTTAATCTAAAAGCATTGCCCTTCTATTGGTATTAATTCGGGGC1396990.11097517107000682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)