FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70265537
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2069770.2945640335745246No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC867060.12339761951865534No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG767280.10919720146734238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)