FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55955554
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1090110.19481712217521785No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA959120.17140747100815049No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC779270.13926588949508034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)