FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98280099
Total Bases7.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC9416520.9581309029816911No Hit
GCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGGACTTCCACT6665270.6781912175322493No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG4809220.48933813141559823No Hit
GGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGT3837430.3904584996398915No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC3480740.35416529240573924No Hit
CTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGGACTTCCACTG2727600.2775332979670686No Hit
GGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCT2560500.2605308730916113No Hit
GCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTA2420750.24631131069576964No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2409900.24520732320385635No Hit
GTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGC2307700.23480847328002796No Hit
CTCCCGTGGTGGGGGGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGG2157150.2194900108922357No Hit
GTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCA2087220.2123746334443558No Hit
CTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGG1902290.1935580060821876No Hit
CCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA1765680.1796579386840056No Hit
CCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAG1745750.1776300611988598No Hit
GGGGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCT1718680.17487568871903558No Hit
GGGGGGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTT1603430.16314900130493357No Hit
GGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTG1589360.1617173788154202No Hit
GCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCC1554530.15817342634137965No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC1543030.1570033013499508No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1527020.15537428386188337No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT1506750.153311811376991No Hit
GGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCC1393760.14181507896120454No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1363950.1387819114834225No Hit
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT1350170.137379796493693No Hit
GCCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCA1321770.13449009651486005No Hit
CTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTCTCT1235900.12575282407886057No Hit
CTCAGGCGTCAGGCTCAGGTAGCTGCTGGCCGCGTACTTGTTGTTGCTTT1174190.11947383162485417No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT1162600.11829454913349242No Hit
GGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTC1150400.11705319914258532No Hit
GTGGGGGGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTC1135260.11551270415386945No Hit
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA1122970.11426219666302942No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGG1064620.10832508420651876No Hit
CCCGTGGTGGGGGGTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCC1032180.10502431423069689No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTT1017100.10348992424193629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)