FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54181971
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC989760.18267331027880104No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA705410.1301927536006396No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC637280.11761846020699396No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG574600.10605003645954483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)